PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008228-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 239aa    MW: 26050.4 Da    PI: 5.9069
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008228-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.6e-093252346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W+ Ia+ ++ gRt++++k++w++
  AHYPO_008228-RA  3 RWSVIAANLP-GRTDNDVKNHWNT 25
                     4*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.633131IPR017930Myb domain
SuperFamilySSF466891.14E-7235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-11337IPR009057Homeodomain-like
PfamPF002491.5E-6325IPR001005SANT/Myb domain
CDDcd001671.01E-6327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSRWSVIAAN LPGRTDNDVK NHWNTKLKKK LFGGNNNNNS NINKFNPSII PKIEVPFNYT  60
NIFNHNNSSI FNVNPQSSTP TPSISPSYVD NNGTNHNFNH DHDHHNQIYV PNLPSFSNLL  120
AQCSAPTSSM SLLPNFTTLD HSYNADHDPS HSINYSRNPF YTLTSSFTGP ENVGPPEEVS  180
SVSGSSSIVN GSSLEDDPFL AELGFGSIQE VMMNPTCGYG DGEDIKPQLH GLGQSVAN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667955.12e-56PREDICTED: transcription factor RAX1-like
TrEMBLA0A0K9RU574e-67A0A0K9RU57_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-08myb domain protein 36